# Makefile for run_kalignP.sh
CP = /bin/cp -f 
RM = /bin/rm -f

all:
	make -C src/kalignP
	make -C bin/psipred32Fast/src
	make -C src/modhmm
	make install -C src/modhmm
	make -C src/cmdline
install:
	make install -C src/kalignP
	make install -C bin/psipred32Fast/src
	make install -C src/modhmm
	make install -C src/cmdline
	$(CP) src/modhmm/bin/modhmms_scampi bin/
clean:
	make clean -C src/kalignP
	make clean -C bin/psipred32Fast/src
	make clean -C src/modhmm
	make clean -C src/cmdline
	$(RM) src/modhmm/bin/*
	
