!_TAG_FILE_FORMAT	2	/extended format; --format=1 will not append ;" to lines/
!_TAG_FILE_SORTED	1	/0=unsorted, 1=sorted, 2=foldcase/
!_TAG_PROGRAM_AUTHOR	Darren Hiebert	/dhiebert@users.sourceforge.net/
!_TAG_PROGRAM_NAME	Exuberant Ctags	//
!_TAG_PROGRAM_URL	http://ctags.sourceforge.net	/official site/
!_TAG_PROGRAM_VERSION	5.5.4	//
ALA	sspred_avpred.c	/^    ALA, ARG, ASN, ASP, CYS,$/;"	e	enum:aacodes	file:
ARG	sspred_avpred.c	/^    ALA, ARG, ASN, ASP, CYS,$/;"	e	enum:aacodes	file:
ASN	sspred_avpred.c	/^    ALA, ARG, ASN, ASP, CYS,$/;"	e	enum:aacodes	file:
ASP	sspred_avpred.c	/^    ALA, ARG, ASN, ASP, CYS,$/;"	e	enum:aacodes	file:
BUFLEN	pfilt.c	33;"	d	file:
CWIN	pfilt.c	37;"	d	file:
CYS	sspred_avpred.c	/^    ALA, ARG, ASN, ASP, CYS,$/;"	e	enum:aacodes	file:
EPSILON	chkparse.c	15;"	d	file:
FALSE	chkparse.c	17;"	d	file:
FALSE	pfilt.c	42;"	d	file:
FALSE	seq2mtx.c	15;"	d	file:
FALSE	ssdefs.h	/^    FALSE, TRUE$/;"	e
FWIN	pfilt.c	40;"	d	file:
GLN	sspred_avpred.c	/^    GLN, GLU, GLY, HIS, ILE,$/;"	e	enum:aacodes	file:
GLU	sspred_avpred.c	/^    GLN, GLU, GLY, HIS, ILE,$/;"	e	enum:aacodes	file:
GLY	sspred_avpred.c	/^    GLN, GLU, GLY, HIS, ILE,$/;"	e	enum:aacodes	file:
HIS	sspred_avpred.c	/^    GLN, GLU, GLY, HIS, ILE,$/;"	e	enum:aacodes	file:
ILE	sspred_avpred.c	/^    GLN, GLU, GLY, HIS, ILE,$/;"	e	enum:aacodes	file:
IPERGRP	sspred_net.h	1;"	d
IPERGRP	sspred_net2.h	1;"	d
LEU	sspred_avpred.c	/^    LEU, LYS, MET, PHE, PRO,$/;"	e	enum:aacodes	file:
LYS	sspred_avpred.c	/^    LEU, LYS, MET, PHE, PRO,$/;"	e	enum:aacodes	file:
MAX	chkparse.c	22;"	d	file:
MAX	seq2mtx.c	20;"	d	file:
MAX	ssdefs.h	9;"	d
MAXSEQLEN	chkparse.c	13;"	d	file:
MAXSEQLEN	pfilt.c	34;"	d	file:
MAXSEQLEN	seq2mtx.c	13;"	d	file:
MAXSEQLEN	ssdefs.h	1;"	d
MAXSEQLEN	sspred_hmulti.c	18;"	d	file:
MET	sspred_avpred.c	/^    LEU, LYS, MET, PHE, PRO,$/;"	e	enum:aacodes	file:
MIN	chkparse.c	21;"	d	file:
MIN	seq2mtx.c	19;"	d	file:
MIN	ssdefs.h	10;"	d
NUM_HID	sspred_net.h	7;"	d
NUM_HID	sspred_net2.h	7;"	d
NUM_IN	sspred_net.h	6;"	d
NUM_IN	sspred_net2.h	6;"	d
NUM_OUT	sspred_net.h	8;"	d
NUM_OUT	sspred_net2.h	8;"	d
PHE	sspred_avpred.c	/^    LEU, LYS, MET, PHE, PRO,$/;"	e	enum:aacodes	file:
PRO	sspred_avpred.c	/^    LEU, LYS, MET, PHE, PRO,$/;"	e	enum:aacodes	file:
PrintHelp	seq2mtx.c	/^void PrintHelp()$/;"	f
PrintHelp	sspred_avpred.c	/^void PrintHelp()$/;"	f
REAL	ssdefs.h	12;"	d
ReadFileList	seq2mtx.c	/^char** ReadFileList(const char* filename, char **filenameList, int* p_cntfile)\/*{{{*\/$/;"	f
ReadFileList	sspred_avpred.c	/^char** ReadFileList(const char* filename, char **filenameList, int* p_cntfile)\/*{{{*\/$/;"	f
SER	sspred_avpred.c	/^    SER, THR, TRP, TYR, VAL,$/;"	e	enum:aacodes	file:
SQR	chkparse.c	20;"	d	file:
SQR	seq2mtx.c	18;"	d	file:
SQR	ssdefs.h	8;"	d
THR	sspred_avpred.c	/^    SER, THR, TRP, TYR, VAL,$/;"	e	enum:aacodes	file:
TOTAL	sspred_net.h	10;"	d
TOTAL	sspred_net2.h	10;"	d
TRP	sspred_avpred.c	/^    SER, THR, TRP, TYR, VAL,$/;"	e	enum:aacodes	file:
TRUE	chkparse.c	18;"	d	file:
TRUE	pfilt.c	43;"	d	file:
TRUE	seq2mtx.c	16;"	d	file:
TRUE	ssdefs.h	/^    FALSE, TRUE$/;"	e
TYR	sspred_avpred.c	/^    SER, THR, TRP, TYR, VAL,$/;"	e	enum:aacodes	file:
UNK	sspred_avpred.c	/^    UNK$/;"	e	enum:aacodes	file:
VAL	sspred_avpred.c	/^    SER, THR, TRP, TYR, VAL,$/;"	e	enum:aacodes	file:
WINL	sspred_net.h	3;"	d
WINL	sspred_net2.h	3;"	d
WINR	sspred_net.h	4;"	d
WINR	sspred_net2.h	4;"	d
_FILE_OFFSET_BITS	pfilt.c	25;"	d	file:
aacodes	sspred_avpred.c	/^enum aacodes$/;"	g	file:
aafreq	chkparse.c	/^float aafreq[26] =$/;"	v
aamat	chkparse.c	/^const short           aamat[23][23] =$/;"	v
aamat	seq2mtx.c	/^const short           aamat[23][23] =$/;"	v
aamean	pfilt.c	/^const float     aamean[20] =$/;"	v
aamean100	pfilt.c	/^const float     aamean100[20] =$/;"	v
aanum	chkparse.c	/^int aanum(int ch)$/;"	f
aanum	pfilt.c	/^                aanum(int ch)$/;"	f
aanum	seq2mtx.c	/^  aanum(int ch)$/;"	f
aanum	sspred_avpred.c	/^aanum(ch)$/;"	f
aanum	sspred_hmulti.c	/^                aanum(int ch)$/;"	f
aasd	pfilt.c	/^const float     aasd[20] =$/;"	v
aasd100	pfilt.c	/^const float     aasd100[20] =$/;"	v
activation	sspred_avpred.c	/^float           activation[TOTAL], bias[TOTAL], *weight[TOTAL];$/;"	v
activation	sspred_hmulti.c	/^float            activation[TOTAL], bias[TOTAL], *weight[TOTAL];$/;"	v
bias	sspred_avpred.c	/^float           activation[TOTAL], bias[TOTAL], *weight[TOTAL];$/;"	v
bias	sspred_hmulti.c	/^float            activation[TOTAL], bias[TOTAL], *weight[TOTAL];$/;"	v
biasfilt	pfilt.c	/^int nofrag = FALSE, tmfilt = TRUE, coilfilt = TRUE, biasfilt = FALSE, complexfilt = TRUE;$/;"	v
ccoilmat	pfilt.c	/^const float     ccoilmat[23][7] =$/;"	v
coilfilt	pfilt.c	/^int nofrag = FALSE, tmfilt = TRUE, coilfilt = TRUE, biasfilt = FALSE, complexfilt = TRUE;$/;"	v
complexfilt	pfilt.c	/^int nofrag = FALSE, tmfilt = TRUE, coilfilt = TRUE, biasfilt = FALSE, complexfilt = TRUE;$/;"	v
compute_output	sspred_avpred.c	/^compute_output(void)$/;"	f
compute_output	sspred_hmulti.c	/^                compute_output(void)$/;"	f
err	sspred_avpred.c	/^err(char *s)$/;"	f
err	sspred_hmulti.c	/^                err(char *s)$/;"	f
fail	chkparse.c	/^  fail(char *errstr)$/;"	f
fail	pfilt.c	/^                fail(char *errstr)$/;"	f
fail	seq2mtx.c	/^  fail(char *errstr)$/;"	f
fail	sspred_avpred.c	/^fail(char *s)$/;"	f
fail	sspred_hmulti.c	/^                fail(char *s)$/;"	f
filtseq	pfilt.c	/^void            filtseq(char *desc, char *seq, int seqlen)$/;"	f
findtoken	chkparse.c	/^void findtoken(char *buf, char *token, FILE *ifp)$/;"	f
fratio	chkparse.c	/^float fratio[MAXSEQLEN][28], pssm[MAXSEQLEN][28];$/;"	v
fwt_to	sspred_avpred.c	/^int             nwtsum, fwt_to[TOTAL], lwt_to[TOTAL];$/;"	v
fwt_to	sspred_hmulti.c	/^int             nwtsum, fwt_to[TOTAL], lwt_to[TOTAL];$/;"	v
getmtx	sspred_avpred.c	/^int             getmtx(FILE *lfil)$/;"	f
getpssm	chkparse.c	/^int getpssm(char *dseq, FILE *ifp)$/;"	f
getseq	seq2mtx.c	/^  getseq(char *dbname, char *dseq, FILE * lfil)$/;"	f
getss	sspred_hmulti.c	/^int             getss(FILE * lfil)$/;"	f
init	sspred_avpred.c	/^init(void)$/;"	f
init	sspred_hmulti.c	/^init(void)$/;"	f
load_wts	sspred_avpred.c	/^load_wts(char *fname)$/;"	f
load_wts	sspred_hmulti.c	/^load_wts(char *fname)$/;"	f
logistic	ssdefs.h	15;"	d
lwt_to	sspred_avpred.c	/^int             nwtsum, fwt_to[TOTAL], lwt_to[TOTAL];$/;"	v
lwt_to	sspred_hmulti.c	/^int             nwtsum, fwt_to[TOTAL], lwt_to[TOTAL];$/;"	v
main	chkparse.c	/^int main(int argc, char **argv)$/;"	f
main	pfilt.c	/^int main(int argc, char **argv)$/;"	f
main	seq2mtx.c	/^int main(int argc, char **argv)$/;"	f
main	sspred_avpred.c	/^main(int argc, char **argv)$/;"	f
main	sspred_hmulti.c	/^int main(int argc, char **argv)$/;"	f
ncbicodes	chkparse.c	/^const char *ncbicodes = "XAXCDEFGHIKLMNPQRSTVWXYXXX";$/;"	v
nofrag	pfilt.c	/^int nofrag = FALSE, tmfilt = TRUE, coilfilt = TRUE, biasfilt = FALSE, complexfilt = TRUE;$/;"	v
nprof	sspred_hmulti.c	/^int             seqlen, nprof;$/;"	v
nwtsum	sspred_avpred.c	/^int             nwtsum, fwt_to[TOTAL], lwt_to[TOTAL];$/;"	v
nwtsum	sspred_hmulti.c	/^int             nwtsum, fwt_to[TOTAL], lwt_to[TOTAL];$/;"	v
predict	sspred_avpred.c	/^predict(int argc, char **argv)$/;"	f
predict	sspred_hmulti.c	/^                predict(int niters, float dca, float dcb, char *outname)$/;"	f
predict_new	sspred_avpred.c	/^void predict_new(FILE* fpout, int numWeightFile)\/*{{{*\/$/;"	f
profile	sspred_avpred.c	/^int             profile[MAXSEQLEN][20];$/;"	v
profile	sspred_hmulti.c	/^float           profile[MAXSEQLEN][3];$/;"	v
pssm	chkparse.c	/^float fratio[MAXSEQLEN][28], pssm[MAXSEQLEN][28];$/;"	v
readhex	chkparse.c	/^int readhex(char *seq, FILE *ifp)$/;"	f
rescodes	pfilt.c	/^const char     *rescodes = "ARNDCQEGHILKMFPSTWYVBZX";$/;"	v
rescodes	seq2mtx.c	/^const char *rescodes = "ARNDCQEGHILKMFPSTWYVBZX";$/;"	v
rootname	seq2mtx.c	/^char *rootname(const char* filename, char* rtname)\/*{{{*\/$/;"	f
rootname	sspred_avpred.c	/^char *rootname(const char* filename, char* rtname)\/*{{{*\/$/;"	f
roundint	chkparse.c	/^int roundint(double x)$/;"	f
seq	sspred_avpred.c	/^char seq[MAXSEQLEN];$/;"	v
seq	sspred_hmulti.c	/^char            seq[MAXSEQLEN];$/;"	v
seqlen	sspred_avpred.c	/^int             seqlen;$/;"	v
seqlen	sspred_hmulti.c	/^int             seqlen, nprof;$/;"	v
tmfilt	pfilt.c	/^int nofrag = FALSE, tmfilt = TRUE, coilfilt = TRUE, biasfilt = FALSE, complexfilt = TRUE;$/;"	v
transmemsc	pfilt.c	/^const int       transmemsc[23] =$/;"	v
weight	sspred_avpred.c	/^float           activation[TOTAL], bias[TOTAL], *weight[TOTAL];$/;"	v
weight	sspred_hmulti.c	/^float            activation[TOTAL], bias[TOTAL], *weight[TOTAL];$/;"	v
wtfnm	sspred_avpred.c	/^char           *wtfnm;$/;"	v
wtfnm	sspred_hmulti.c	/^char           *wtfnm;$/;"	v
